BtaEX6043069 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004884 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr11:10365583-10370761:+
Coord C1 exon
chr11:10365583-10365638
Coord A exon
chr11:10370080-10370237
Coord C2 exon
chr11:10370674-10370761
Length
158 bp
Sequences
Splice sites
3' ss Seq
ATGTCCCCCTCACTGACCAGCGG
3' ss Score
6.7
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTCACGCCCAGAGCAGAAGCATGAACGATATTTCTCTCACCCCAAATACCGACCAG
Seq A exon
CGGAAAAACAAATTCATGAAGAAGATCCCCAAGGACTCAGAAGCCTCCAACGTGCTTGTGGGCGAGGTGGACTTCCTGGACCAGCCGTTCATCGCTTTCGTACGTCTCATCCAGTCAGCTATGCTGGGAGGGGTGACCGAGGTGCCTGTGCCTACCAG
Seq C2 exon
ATTTCTGTTCATACTGCTGGGACCTTCTGGGAGAGCAAAATCCTACAATGAAATTGGCCGTGCCATTGCAACCCTCATGGTGGATGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004884-'13-9,'13-8,15-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.579 A=0.151 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(6.7=100)
A:
PF075658=Band_3_cyto=FE(19.3=100)
C2:
PF075658=Band_3_cyto=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAGCAGAAGCATGAACG
R:
CCATGAGGGTTGCAATGGC
Band lengths:
130-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]