RnoEX0082845 @ rn6
Exon Skipping
Gene
ENSRNOG00000010378 | Slc4a5
Description
solute carrier family 4 member 5 [Source:RGD Symbol;Acc:1303009]
Coordinates
chr4:114959909-114962597:+
Coord C1 exon
chr4:114959909-114959964
Coord A exon
chr4:114961275-114961432
Coord C2 exon
chr4:114962510-114962597
Length
158 bp
Sequences
Splice sites
3' ss Seq
TCATTTTCCTCCCGGAGCAGCGG
3' ss Score
4.6
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTCATGCCCAGAGTAGAAGCATGAATGACATCTCCCATACCCCAAACACAGACCAG
Seq A exon
CGGAAAAACAAATTCATGAAGAAGATCCCCAAGGACTCAGAAGCCTCCAACGTGCTTGTGGGCGAGGTGGACTTCCTGGACCAGCCATTCATTGCGTTTGTTCGTCTTGCCCAGTCTTCCATGCTGGGAGGGGTGACCGAGGTGCCTGTCCCCACCAG
Seq C2 exon
ATTTCTGTTCATACTTCTAGGACCTTCTGGAAGAGCAAAGTCCTACAATGAGATTGGCCGAGCCATTGCAACCCTCATGGTGGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010378-'10-12,'10-11,11-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=0.170 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(6.7=100)
A:
PF075658=Band_3_cyto=FE(19.4=100)
C2:
PF075658=Band_3_cyto=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATGCCCAGAGTAGAAGCA
R:
CCATGAGGGTTGCAATGGCTC
Band lengths:
136-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]