MmuEX6005147 @ mm10
Exon Skipping
Gene
ENSMUSG00000068323 | Slc4a5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:MGI Symbol;Acc:MGI:2443220]
Coordinates
chr6:83263516-83265760:+
Coord C1 exon
chr6:83263516-83263571
Coord A exon
chr6:83264263-83264420
Coord C2 exon
chr6:83265673-83265760
Length
158 bp
Sequences
Splice sites
3' ss Seq
TCATTTTCCTCCCGGAGCAGCGG
3' ss Score
4.6
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTCATGCCCAGAGTAGAAGCATGAATGACATCTCTCATACCCCAAACACAGACCAG
Seq A exon
CGGAAAAACAAATTCATGAAGAAGATTCCCAAGGACTCAGAAGCTTCCAACGTGCTCGTGGGCGAGGTGGACTTCCTGGACCAGCCATTCATTGCATTTGTTCGTCTTGTCCAGTCTGCCATGCTGGGAGGGGTGACAGAGGTGCCTGTCCCCACCAG
Seq C2 exon
ATTTCTGTTCATACTATTAGGACCTTCCGGGAGAGCAAAGTCCTATAATGAGATTGGCCGAGCCATCGCAACCCTCATGGTGGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068323-'5-20,'5-14,14-20=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.789 A=0.151 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(6.7=100)
A:
PF075658=Band_3_cyto=FE(19.4=100)
C2:
PF075658=Band_3_cyto=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATGCCCAGAGTAGAAGCA
R:
CATGAGGGTTGCGATGGCTC
Band lengths:
135-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types