DreEX6011059 @ danRer10
Exon Skipping
Gene
ENSDARG00000002771 | SLC4A5 (1 of 2)
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr5:27477367-27484172:-
Coord C1 exon
chr5:27484117-27484172
Coord A exon
chr5:27477829-27477986
Coord C2 exon
chr5:27477367-27477454
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTACTCATTTCAGCTA
3' ss Score
8.39
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GCCACGCTCAAAGCAGGAGTATGAATGACATCGCCGACACACCAAGCACAGACCAG
Seq A exon
CTAAAGAACAAGTTCATGAAGAAAATCCCCAGAGATGCAGAAGCATCCAATGTTCTGGTGGGAGAAGTGGACTTCTTAGAAAAACCCTTCGTTGCCTTCGTTCGTCTGTCTCAGGCCACCACTCTTGGAGGCCTGACAGAAGTCCCAGTGCCCACCAG
Seq C2 exon
ATTCTTGTTTGTGCTACTTGGGCCTCCTGGCAAAGCCAAATCTTATAATGAGATCGGACGTGCCATTGCCACTCTCATGGTGGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002771-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.789 A=0.140 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(6.7=100)
A:
PF075658=Band_3_cyto=FE(19.3=100)
C2:
PF075658=Band_3_cyto=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGCTCAAAGCAGGAGTAT
R:
TCATCCACCATGAGAGTGGCA
Band lengths:
142-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]