GgaEX7011576 @ galGal4
Exon Skipping
Gene
ENSGALG00000013515 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr22:2850050-2853083:-
Coord C1 exon
chr22:2853028-2853083
Coord A exon
chr22:2850225-2850382
Coord C2 exon
chr22:2850050-2850137
Length
158 bp
Sequences
Splice sites
3' ss Seq
CCCCCCATCTCCCCCAACAGCTG
3' ss Score
9.75
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCCACGTGCAAAGCCGAAGCATGAATGATATCTCAGACACACCCAGCACTGACCAG
Seq A exon
CTGAAAAACAAGTTCATCAAGAAGATCCCCAAGGATGCTGAGGCTTCCAACGTGCTGGTGGGAGAAGTGGAGTTCCTTGAGAAGCCCTTCGTAGCGTTCGTGCGGCTGCTCCAGGCCACAATGCTGGGAGGGGTGACGGAGGTGCCCGTCCCCACCAG
Seq C2 exon
ATTCCTCTTTATTCTCCTGGGCCCTGCAGGAAAAGCCAAATCCTACAATGAGATCGGCAGAGCCATCGCGACCCTCATGGTGGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013515-'14-12,'14-11,15-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(6.7=100)
A:
PF075658=Band_3_cyto=FE(19.3=100)
C2:
PF075658=Band_3_cyto=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAAAGCCGAAGCATGAAT
R:
CATGAGGGTCGCGATGGC
Band lengths:
130-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]