BtaEX6045942 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007963 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr11:88498839-88503242:+
Coord C1 exon
chr11:88498839-88498937
Coord A exon
chr11:88500061-88500238
Coord C2 exon
chr11:88503078-88503242
Length
178 bp
Sequences
Splice sites
3' ss Seq
TGTCCCTTCACTGTTTACAGAAA
3' ss Score
8.88
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GATGGCGAAACACCCCTTATAAAGGCTACCAAGATGAGAAACATAGAAGTGGTAGAGCTGCTGCTGGATAAAGGAGCCAAAGTGTCTGCTGTCGATAAG
Seq A exon
AAAGGAGACACCCCTCTGCACATTGCTATTCGTGGGAGGAGTCGGAAACTGGCAGAACTCCTTTTAAGAAACCCCAAAGATGGACGGTTACTGTATAGACCCAACAAAGCAGGCGAGACTCCCTACAATATTGACTGTAGCCATCAGAAAAGTATTTTAACTCAAATATTTGGAGCCA
Seq C2 exon
GACACTTGTCTCCTACCGAGACAGATGGTGACATGCTTGGTTACGATCTGTACAGCAGTGCCCTGGCAGATATTCTCAGTGAGCCTACCATGCAGCCGCCCATTTGTGTGGGCCTGTATGCACAGTGGGGAAGTGGTAAATCCTTCTTACTCAAGAAACTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007963-'10-16,'10-12,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(35.2=100)
A:
PF127962=Ank_2=PD(31.9=48.3)
C2:
PF076939=KAP_NTPase=PU(8.0=73.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCGAAACACCCCTTATA
R:
GGATTTACCACTTCCCCACTGT
Band lengths:
242-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]