HsaEX6011788 @ hg19
Exon Skipping
Gene
ENSG00000134313 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:29508]
Coordinates
chr2:8931190-8936999:-
Coord C1 exon
chr2:8936901-8936999
Coord A exon
chr2:8933940-8934117
Coord C2 exon
chr2:8931190-8931354
Length
178 bp
Sequences
Splice sites
3' ss Seq
TTCGTACTATTATTTTACAGAAA
3' ss Score
8.22
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GATGGTGAAACGCCACTTATAAAGGCTACCAAGATGAGAAACATTGAAGTGGTGGAGCTGCTGCTAGATAAAGGTGCTAAAGTGTCTGCTGTAGATAAG
Seq A exon
AAAGGAGATACTCCCTTGCATATTGCTATTCGTGGAAGGAGCCGGAAACTGGCAGAACTGCTTTTAAGAAATCCCAAAGATGGGCGATTACTTTATAGGCCCAACAAAGCAGGCGAGACTCCTTATAATATTGACTGTAGCCATCAGAAGAGTATTTTAACTCAAATATTTGGAGCCA
Seq C2 exon
GACACTTGTCTCCTACTGAAACAGACGGTGACATGCTTGGATATGATTTATATAGCAGTGCCCTGGCAGATATTCTCAGTGAGCCTACCATGCAGCCACCCATTTGTGTGGGGTTATATGCACAGTGGGGAAGTGGGAAATCTTTCTTACTCAAGAAACTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134313-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(35.2=100)
A:
PF127962=Ank_2=PD(31.9=48.3)
C2:
PF076939=KAP_NTPase=PU(8.0=73.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAACGCCACTTATAAAGGC
R:
GAAAGATTTCCCACTTCCCCACT
Band lengths:
242-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)