RnoEX0046692 @ rn6
Exon Skipping
Gene
ENSRNOG00000023176 | Kidins220
Description
kinase D-interacting substrate 220 [Source:RGD Symbol;Acc:619949]
Coordinates
chr6:44253238-44257540:+
Coord C1 exon
chr6:44253238-44253336
Coord A exon
chr6:44255881-44256058
Coord C2 exon
chr6:44257376-44257540
Length
178 bp
Sequences
Splice sites
3' ss Seq
CCTGGGTTGCTCTTTTACAGAAA
3' ss Score
8.69
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GATGGTGAGACACCACTGATAAAAGCCACCAAGATGAGAAATATTGAAGTGGTGGAGCTGCTGCTGGATAAGGGGGCTAAGGTGTCTGCTGTGGACAAG
Seq A exon
AAAGGGGACACTCCCCTGCACGTTGCCATCCGAGGGAGGAGCCGGAGACTGGCCGAACTTCTTTTACGGAACCCCAAAGATGGACGGTTACTCTACAGACCCAACAAAGCAGGCGAGACTCCCTACAACATTGACTGCAGCCACCAGAAAAGCATTTTAACTCAAATATTTGGAGCCA
Seq C2 exon
GACACTTGTCTCCTACGGAAACAGATGGCGACATGCTTGGTTATGATTTGTATAGCAGTGCCCTGGCTGATATTCTCAGTGAACCCACCATGCAACCACCCATTTGTGTGGGCTTGTATGCACAGTGGGGAAGTGGGAAGTCTTTCTTACTCAAGAAACTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023176-'24-20,'24-19,27-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(35.2=100)
A:
PF127962=Ank_2=PD(31.9=48.3)
C2:
PF076939=KAP_NTPase=PU(8.0=73.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGACACCACTGATAAAAGCCA
R:
AGAAAGACTTCCCACTTCCCCA
Band lengths:
242-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]