MmuEX6080439 @ mm10
Exon Skipping
Gene
ENSMUSG00000036333 | Kidins220
Description
kinase D-interacting substrate 220 [Source:MGI Symbol;Acc:MGI:1924730]
Coordinates
chr12:24999261-25003153:+
Coord C1 exon
chr12:24999261-24999359
Coord A exon
chr12:25001573-25001750
Coord C2 exon
chr12:25002989-25003153
Length
178 bp
Sequences
Splice sites
3' ss Seq
CCTGTGCTGCCATTTTGCAGAAA
3' ss Score
9.51
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GATGGCGAGACACCACTAATAAAGGCCACCAAGATGAGAAATATTGAAGTGGTGGAGCTGCTGCTGGATAAGGGGGCTAGGGTGTCTGCTGTGGACAAG
Seq A exon
AAAGGTGACACTCCCCTGCACGTTGCCATCCGAGGGAGGAGCCGGAGACTGGCAGAACTTCTTTTACGGAACCCCAAAGATGGACGGTTACTTTACAGGCCCAACAAAGCAGGCGAGACTCCCTACAACATTGACTGCAGCCACCAGAAAAGCATTTTAACTCAAATATTTGGAGCCA
Seq C2 exon
GACACTTGTCTCCTACGGAAACAGACGGTGACATGCTTGGTTACGATTTGTATAGCAGCGCCCTGGCAGATATTCTCAGTGAGCCCACCATGCAGCCACCCATCTGTGTGGGCTTGTATGCACAGTGGGGAAGTGGGAAGTCCTTCTTACTCAAGAAACTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036333-'29-24,'29-21,33-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(35.2=100)
A:
PF127962=Ank_2=PD(31.9=48.3)
C2:
PF076939=KAP_NTPase=PU(8.0=73.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGACACCACTAATAAAGGCC
R:
AGAAGGACTTCCCACTTCCCC
Band lengths:
242-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types