GgaEX1031948 @ galGal3
Exon Skipping
Gene
ENSGALG00000016409 | KIDINS220
Description
NA
Coordinates
chr3:98788206-98789944:-
Coord C1 exon
chr3:98789846-98789944
Coord A exon
chr3:98788760-98788937
Coord C2 exon
chr3:98788206-98788370
Length
178 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTACTGAATTGCAGAAA
3' ss Score
8.59
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
GATGGAGAAACACCACTTATCAAGGCAACCAAGATGAGAAATATTGAAATAGTAGAGCTTCTTCTGGACAAAGGAGCTAAAGTCTCTGCTGTAGACAAG
Seq A exon
AAAGGGGATACCCCACTTCATATTGCTATTCGTGGAAGAAGCCGTAAACTTGCTGAACTGCTCTTGCGAAACCCAAAAGATGGTAGATTGCTTTATAGACCCAACAAAGCAGGAGAAACACCTTACAACATTGACTGCAGCCACCAGAAGAGTATTTTAACACAGATATTTGGAGCTA
Seq C2 exon
GACATTTGTCTCCCACGGAATCTGATGGTGACATGCTGGGTTATGATCTGTACAGCAGTGCTTTGGCAGATATTCTGAGTGAGCCAACCATGCAGCCACCTATTTGTGTGGGCTTATATGCTCAGTGGGGAAGTGGAAAATCTTTCCTGCTCAAGAAACTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016409-'17-15,'17-14,18-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(35.2=100)
A:
PF127962=Ank_2=PD(31.9=48.3)
C2:
PF076939=KAP_NTPase=PU(8.0=73.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAAACACCACTTATCAAGGC
R:
AAAGATTTTCCACTTCCCCACTGA
Band lengths:
242-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]