DreEX0041360 @ danRer10
Exon Skipping
Gene
ENSDARG00000031240 | kidins220a
Description
kinase D-interacting substrate 220a [Source:ZFIN;Acc:ZDB-GENE-041014-170]
Coordinates
chr17:34982904-34989009:-
Coord C1 exon
chr17:34988911-34989009
Coord A exon
chr17:34987259-34987436
Coord C2 exon
chr17:34982904-34983068
Length
178 bp
Sequences
Splice sites
3' ss Seq
CTGCATTGTTATTTTCTCAGAAA
3' ss Score
6.35
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GATGCAGAGACTCCACTTATAAAAGCCACCAAGATGAGAAACATGGAAATCGTGGAGCTTCTATTGGACAAAGGTGCCAAGGTGTCAGCGGTGGATAAG
Seq A exon
AAAGGTGACACACCTCTGCATATTGCCATCCGTGGGAGAAGCCGCAAACTGGCTGAGCTGCTCTTGAGAAACCCTAAAGATGGCCGTCTGCTCTACCGGCCCAACAAAGAGGGAGAAACGCCCTACAACATTGACTGCACACACCAAAAAAGCATCCTCACACAGATATTCGGAGCCA
Seq C2 exon
AGCACCTGTCTCCCTCTGAGTGTGATGGAGATATGCTGGGTTATGACCTGTACAGCAGTGCTCTGGCTGATATCTTGAGTGAACCCACAATGCAGCCTCCCATCTGTGTGGGCCTTTATGCCCAGTGGGGCAGCGGCAAGTCCTTCCTACTGAAGAAACTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031240-'11-13,'11-11,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.083 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(35.2=100)
A:
PF127962=Ank_2=PD(31.9=48.3)
C2:
PF076939=KAP_NTPase=PU(8.0=73.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGACTCCACTTATAAAAGCCA
R:
AGTAGGAAGGACTTGCCGCT
Band lengths:
247-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]