BtaEX6045945 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007963 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr11:88493638-88497824:+
Coord C1 exon
chr11:88493638-88493835
Coord A exon
chr11:88495541-88495639
Coord C2 exon
chr11:88497726-88497824
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTGTCTTTTTAGAGT
3' ss Score
11.8
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
AATTCAATGACCGCACTTATTGTGGCAGTAAAAGGAGGCTACACACAGTCAGTGAAAGAAATTTTGAAGCGAAATCCAAATGTAAATTTAACAGATAAGGATGGAAATACAGCCTTGATGATTGCATCGAAGGAGGGACATACAGAAATTGTACAGGATCTCCTTGACGCTGGGACATATGTGAACATACCTGATAGG
Seq A exon
AGTGGAGATACTGTCTTAATTGGTGCTGTCAGAGGTGGTCATGTGGAAATTGTTCGAGCACTTCTCCAAAAATATGCTGATATCGACATTAGAGGACAG
Seq C2 exon
GACAGTAAAACTGCCTTGTATTGGGCTGTTGAGAAAGGAAATGCAACAATGGTGAGAGACATCTTACAGTGCAATCCTGACACTGAAATATGCACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007963-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=47.0),PF0002325=Ank=WD(100=50.0)
A:
PF127962=Ank_2=PD(33.3=93.9)
C2:
PF127962=Ank_2=PU(29.7=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGCATCGAAGGAGGGACA
R:
TCGTGCATATTTCAGTGTCAGGA
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]