GgaEX1031945 @ galGal3
Exon Skipping
Gene
ENSGALG00000016409 | KIDINS220
Description
NA
Coordinates
chr3:98790656-98793771:-
Coord C1 exon
chr3:98793574-98793771
Coord A exon
chr3:98792534-98792632
Coord C2 exon
chr3:98790656-98790754
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCACAATTCTTCCAGAGC
3' ss Score
7.1
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AATTCTATGACTGCCCTTATTGTAGCAGTTAAGGGTGGCTACACCGACTCAGTGAAAGAAATACTGAAAAGGAACCCAAATGTGAACTTAACTGATAAAGATGGAAATACAGCTTTGATGATTGCGTCAAAGGAAGGGCATACTGAAATAGTGCAGGATCTTCTTGATGCTGGGACTTACGTGAATATTCCTGACAGA
Seq A exon
AGCGGAGACACAGTGCTGATTGGGGCTGTTAGAGGAGGTCATGTTGAAATTGTGAGGGCCCTGCTCCATAAGTATGCTGATATAGACATCAGAGGTCAG
Seq C2 exon
GATAATAAAACTGCTTTATATTGGGCAGTTGAGAAAGGAAATGCTACGATGGTGAGGGACATCTTGCAGTGCAACCCTGATACTGAAACGTATACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016409-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.091
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=47.0),PF0002325=Ank=WD(100=50.0)
A:
PF0002325=Ank=WD(100=100.0)
C2:
PF127962=Ank_2=PU(29.7=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTGCGTCAAAGGAAGGGC
R:
TTCAGTATCAGGGTTGCACTGC
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]