HsaEX6011786 @ hg19
Exon Skipping
Gene
ENSG00000134313 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:29508]
Coordinates
chr2:8938332-8943101:-
Coord C1 exon
chr2:8943060-8943101
Coord A exon
chr2:8940530-8940628
Coord C2 exon
chr2:8938332-8938430
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTCTGTCTTCTTAGAGT
3' ss Score
9.7
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GATCTGCTCGACGCTGGAACATATGTGAACATACCTGACAGG
Seq A exon
AGTGGGGATACTGTGTTGATTGGCGCTGTCAGAGGTGGTCATGTTGAAATTGTTCGAGCGCTTCTCCAAAAATATGCTGATATAGACATTAGAGGACAG
Seq C2 exon
GATAATAAAACTGCTTTGTATTGGGCTGTTGAGAAAGGAAATGCAACAATGGTGAGAGATATCTTACAGTGCAATCCTGACACTGAAATATGCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134313-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=47.0),PF0002325=Ank=WD(100=50.0)
A:
PF0002325=Ank=WD(100=100.0)
C2:
PF127962=Ank_2=PU(29.7=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTCGACGCTGGAACATA
R:
GTGCATATTTCAGTGTCAGGATTGC
Band lengths:
135-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)