MmuEX6080442 @ mm10
Exon Skipping
Gene
ENSMUSG00000036333 | Kidins220
Description
kinase D-interacting substrate 220 [Source:MGI Symbol;Acc:MGI:1924730]
Coordinates
chr12:24994812-24998804:+
Coord C1 exon
chr12:24994812-24995009
Coord A exon
chr12:24997232-24997330
Coord C2 exon
chr12:24998706-24998804
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTTTTTCCTTTTAGAGT
3' ss Score
12.05
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AATTCGATGACTGCACTGATTGTGGCAGTGAAAGGGGGCTACACACAGTCAGTGAAGGAGATTCTGAAAAGGAATCCAAACGTGAACCTGACTGATAAGGACGGAAACACAGCCCTGATGATTGCGTCGAAGGAGGGACATATAGAAATTGTGCAGGACCTGTTGGACGCCGGAACATACGTGAACATACCTGACAGG
Seq A exon
AGTGGGGATACTGTATTGATTGGCGCTGTGAGAGGTGGTCATGTTGAAATTGTTCGAGCACTTCTCCAAAAATACGCTGATATAGACATTAGAGGGCAG
Seq C2 exon
GACAATAAGACTGCACTGTATTGGGCTGTTGAGAAAGGCAATGCGACAATGGTGAGAGATATCCTGCAGTGCAATCCTGATACGGAAATATGCACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036333-'25-16,'25-15,26-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=47.0),PF0002325=Ank=WD(100=50.0)
A:
PF0002325=Ank=WD(100=100.0)
C2:
PF127962=Ank_2=PU(29.7=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATTGCGTCGAAGGAGGG
R:
CCGTATCAGGATTGCACTGCA
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types