DreEX0041366 @ danRer10
Exon Skipping
Gene
ENSDARG00000031240 | kidins220a
Description
kinase D-interacting substrate 220a [Source:ZFIN;Acc:ZDB-GENE-041014-170]
Coordinates
chr17:34989140-34989859:-
Coord C1 exon
chr17:34989662-34989859
Coord A exon
chr17:34989473-34989571
Coord C2 exon
chr17:34989140-34989238
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGTGCATGTATATGTCCTAGAGT
3' ss Score
5.87
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
AACTCGATGACTGCTCTGATAGTGGCCGTCCGAGGTGGTTTCACTGAGGTGGTGAAGGAACTGCTTAAGAGAAACCCCAATGTGAATATGACCGACAAAGATGGCAATACAGCATTGATGATCGCCGCTATAGAGGGCTACACCGAGATCGTCCAAGACTTGCTGGACGCAGGCACATACGTCAACATCCCTGACCGG
Seq A exon
AGTGGAGATACGGTGCTTATCGGAGCCGTCAGAGGAGGTCATGTGGAGATTGTCCGAGCTTTGCTGAATAAATACGCTGATATTGATGTCAAAGGCCAG
Seq C2 exon
GATGGTAAGACTGCCCTGTACTGGGCTGTGGAGAAAGGGAATGCTACCATGGTACGAGATATTCTGCAATGCAACCCTGATACTGAGGCCTACACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031240-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(70.3=97.0)
A:
PF0002325=Ank=WD(100=97.0)
C2:
PF127962=Ank_2=PU(29.7=81.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGCCGCTATAGAGGGCTA
R:
AGGCCTCAGTATCAGGGTTGC
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]