RnoEX0046689 @ rn6
Exon Skipping
Gene
ENSRNOG00000023176 | Kidins220
Description
kinase D-interacting substrate 220 [Source:RGD Symbol;Acc:619949]
Coordinates
chr6:44247036-44252787:+
Coord C1 exon
chr6:44247036-44247233
Coord A exon
chr6:44251406-44251504
Coord C2 exon
chr6:44252689-44252787
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTTTTGTCCTTTTAGAGT
3' ss Score
10.86
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AATTCGATGACTGCACTTATCGTGGCAGTGAAAGGAGGCTACACACAGTCCGTGAAAGAGATTTTGAAAAGGAATCCAAATGTGAACCTAACTGACAAGGATGGAAACACAGCTCTGATGATCGCATCGAAGGAGGGACATATTGAGATTGTGCAGGACCTGCTGGACGCCGGAACATACGTGAACATACCTGACAGG
Seq A exon
AGTGGGGATACTGTATTGATCGGCGCTGTGAGAGGTGGTCATGTTGAAATTGTTCGAGCACTTCTCCAAAAATATGCTGATATAGACATTAGAGGGCAG
Seq C2 exon
GACAATAAGACCGCGCTGTATTGGGCCGTTGAAAAGGGAAATGCGACAATGGTGAGGGATATCCTGCAGTGCAATCCGGACACGGAAATATGCACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023176-'21-17,'21-16,22-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=47.0),PF0002325=Ank=WD(100=50.0)
A:
PF0002325=Ank=WD(100=100.0)
C2:
PF127962=Ank_2=PU(29.7=81.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATCGCATCGAAGGAGGGA
R:
TCGTGCATATTTCCGTGTCCG
Band lengths:
178-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]