BtaEX6046038 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021921 | STRBP
Description
Bos taurus spermatid perinuclear RNA binding protein (STRBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001075739]
Coordinates
chr11:94320344-94322372:-
Coord C1 exon
chr11:94322281-94322372
Coord A exon
chr11:94321674-94321769
Coord C2 exon
chr11:94320344-94320455
Length
96 bp
Sequences
Splice sites
3' ss Seq
AATCATTTTGTTTGTTTTAGGCA
3' ss Score
10
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
AAAAAGTTGCGATGAAAGATCCTCCGGACTTACTGGACAGGCAGAAATGCCTGAACGCCTTGGCGTCTCTTCGACATGCCAAATGGTTTCAG
Seq A exon
GCAAGGGCAAATGGATTAAAGTCATGTGTAATTGTCCTCCGCATTCTCCGTGATTTGTGCAACAGAGTCCCCACATGGGCACCATTAAAAGGATGG
Seq C2 exon
CCACTAGAGCTTATATGTGAAAAGTCTATAGGTACTTGTAATAGACCTTTGGGCGCTGGGGAGGCCTTGAGACGAGTAATGGAGTGTTTGGCATCTGGAATTCTACTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021921-'24-20,'24-18,25-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.1=100)
A:
PF075289=DZF=FE(12.5=100)
C2:
PF075289=DZF=FE(14.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATGAAAGATCCTCCGGAC
R:
TCCATTACTCGTCTCAAGGCCT
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]