MmuEX0045533 @ mm9
Exon Skipping
Gene
ENSMUSG00000026915 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:MGI Symbol;Acc:MGI:104626]
Coordinates
chr2:37480698-37483046:-
Coord C1 exon
chr2:37482955-37483046
Coord A exon
chr2:37482002-37482097
Coord C2 exon
chr2:37480698-37480809
Length
96 bp
Sequences
Splice sites
3' ss Seq
GGCATCATTTTTTGTTTTAGGCA
3' ss Score
8.66
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
AAAATGTTATGATGAAAGACCCTCCGGACTTATTGGACAGGCAAAAATGCCTGAATGCCTTGGCTTCTCTTCGACATGCCAAATGGTTCCAG
Seq A exon
GCAAGGGCAAATGGATTAAAATCATGTGTAATTGTCCTCCGCATTCTGCGTGATTTGTGCAACAGAGTACCCACATGGGCACCATTGAAAGGATGG
Seq C2 exon
CCACTAGAGCTTATATGTGAAAAGTCTATAGGTACTTGTAATAGACCTTTGGGCGCTGGGGAGGCCTTGAGACGAGTAATGGAGTGTTTGGCATCTGGAATACTACTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026915-'19-18,'19-17,20-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.1=100)
A:
PF075289=DZF=FE(12.5=100)
C2:
PF075289=DZF=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGACTTATTGGACAGGCA
R:
TTCCAGATGCCAAACACTCCA
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: