GgaEX0001311 @ galGal3
Exon Skipping
Gene
ENSGALG00000001187 | STRBP_CHICK
Description
NA
Coordinates
chr17:9626376-9627906:-
Coord C1 exon
chr17:9627815-9627906
Coord A exon
chr17:9627301-9627396
Coord C2 exon
chr17:9626376-9626487
Length
96 bp
Sequences
Splice sites
3' ss Seq
AACCATTCTGTTTGTTTTAGGCC
3' ss Score
10.06
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ACAGTGTTGCGATGAAAGATCCTCCGGACTTATTGGACAGGCAGAAATGCCTGGAGGCCTTGGCGTCTCTGCGGCACGCCAAATGGTTTCAG
Seq A exon
GCCAGGGCAAATGGACTAAAATCATGTGTAATTGTGCTTCGTATTCTGCGGGATTTGTGCAACAGAGTCCCCACATGGGCACCACTGAAAGGATGG
Seq C2 exon
CCACTCGAGCTTATATGTGAAAAATCTATAGGTACTTGTAATAGACCTTTGGGCGCTGGGGAAGCATTACGACGAGTGATGGAGTGCTTGGCATCTGGAATTCTGCTTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001187_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.1=100)
A:
PF075289=DZF=FE(12.5=100)
C2:
PF075289=DZF=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATGAAAGATCCTCCGGAC
R:
CCAAGCACTCCATCACTCGTC
Band lengths:
175-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]