HsaEX0062624 @ hg38
Exon Skipping
Gene
ENSG00000165209 | STRBP
Description
spermatid perinuclear RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16462]
Coordinates
chr9:123158332-123161068:-
Coord C1 exon
chr9:123160977-123161068
Coord A exon
chr9:123160367-123160462
Coord C2 exon
chr9:123158332-123158429
Length
96 bp
Sequences
Splice sites
3' ss Seq
AATCATTTTGTTTGTTTTAGGCA
3' ss Score
10
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
AAAATGTTTCGATGAAAGATCCTCCGGACTTATTGGACAGGCAGAAATGCCTGAACGCCTTGGCGTCTCTTCGACATGCCAAATGGTTTCAG
Seq A exon
GCAAGGGCAAATGGATTAAAATCATGTGTAATTGTCCTCCGCATTCTGCGTGATTTGTGCAACAGAGTCCCCACATGGGCACCATTGAAAGGATGG
Seq C2 exon
GGGGTCCTGGTCTTCATGATCCTTGTGAGCGAGACCCAACAGATGCTCTGAGCTATATGACCATCCAGCAAAAAGAAGATATTACCCACAGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165209_MULTIEX2-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.000 C2=0.083
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.1=100)
A:
PF075289=DZF=FE(12.5=100)
C2:
PF075289=DZF=FE(12.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGACTTATTGGACAGGCA
R:
CTGTGCACTGTGGGTAATATCT
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development