DreEX6087238 @ danRer10
Exon Skipping
Gene
ENSDARG00000021455 | strbp
Description
spermatid perinuclear RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030729-18]
Coordinates
chr10:9912010-9915015:-
Coord C1 exon
chr10:9914924-9915015
Coord A exon
chr10:9914386-9914481
Coord C2 exon
chr10:9912010-9912121
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATTCCTTCTGGTTTCCTCAGGCT
3' ss Score
9.13
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGAGCGTTGAGTCGAGCGAGCCGGCGGACCTGTTGGATAGACAGAGGTGCCTGGTGGCGTTGGCCTCTCTGCGACATGCCAAATGGTTCCAG
Seq A exon
GCTAGAGTTAATGGCCTAAAGTCATGCGTGATCGTCTTGCGGATACTGAGGCACATGTGCAATAGAGTCCCGGCGTGGGAGCCTCTTAAAGGATGG
Seq C2 exon
CCTTTGGAGTTAATATGCGAAAAGGCCATTGCCACATGTAACAGACCTCTGGGTGCAGGAGAGGCTCTGCGTCGGGTCATGGAGTGTCTGGCCTCTGGGATACTGCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021455-'15-14,'15-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.1=100)
A:
PF075289=DZF=FE(12.5=100)
C2:
PF075289=DZF=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGACCTGTTGGATAGACAG
R:
GTATCCCAGAGGCCAGACACT
Band lengths:
172-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]