GgaEX0001311 @ galGal4
Exon Skipping
Gene
ENSGALG00000001187 | STRBP
Description
Spermatid perinuclear RNA-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q5ZIL4]
Coordinates
chr17:8914386-8916698:-
Coord C1 exon
chr17:8916607-8916698
Coord A exon
chr17:8916093-8916188
Coord C2 exon
chr17:8914386-8914483
Length
96 bp
Sequences
Splice sites
3' ss Seq
AACCATTCTGTTTGTTTTAGGCC
3' ss Score
10.06
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ACAGTGTTGCGATGAAAGATCCTCCGGACTTATTGGACAGGCAGAAATGCCTGGAGGCCTTGGCGTCTCTGCGGCACGCCAAATGGTTTCAG
Seq A exon
GCCAGGGCAAATGGACTAAAATCATGTGTAATTGTGCTTCGTATTCTGCGGGATTTGTGCAACAGAGTCCCCACATGGGCACCACTGAAAGGATGG
Seq C2 exon
GAGGCCCTGGTCTGCATGACCCCTGTGAACGGGAGCCAACAGATGCTTTGTCTGATATGACAGTTCAGCAAAAAGAAGCCATTACGCACAGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001187_MULTIEX1-6/7=5-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.000 C2=0.576
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(12.1=100)
A:
PF075289=DZF=FE(12.5=100)
C2:
PF075289=DZF=FE(12.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATGAAAGATCCTCCGGAC
R:
GCACTGTGCGTAATGGCTTCT
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]