BtaEX6046043 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021921 | STRBP
Description
Bos taurus spermatid perinuclear RNA binding protein (STRBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001075739]
Coordinates
chr11:94292546-94304933:-
Coord C1 exon
chr11:94304734-94304933
Coord A exon
chr11:94297317-94297475
Coord C2 exon
chr11:94292546-94292680
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCTTAATGTAATTTTTACAGGTA
3' ss Score
9.06
5' ss Seq
GAGGTATAC
5' ss Score
6.64
Exon sequences
Seq C1 exon
TTCTGGATAGTAAAGCAATAGACCTCATGAATGCACTAATGAGGCTGAATCAGATCAGGCCTGGGCTTCAGTATAAGCTTTTATCTCAGTCTGGCCCTGTCCATGCCCCAGTCTTCACAATGTCTGTAGATGTGGATGGTACAACATATGAAGCCTCAGGACCATCCAAGAAAACAGCAAAGCTTCACGTAGCAGTGAAG
Seq A exon
GTACTGCAGGCAATGGGATACCCAACGGGCTTTGATGCAGATATTGAATGTATGAGTTCCGATGAAAAGTCAGATAACGAAGGCAAAAATGAAACAGTGTCTTCAAACTCAAGCAATAATACTGGAAATTCTACAACTGAAACCTCCAGTACCTTAGAG
Seq C2 exon
GTAAGAACTCAGGGCCCTATCCTCACAGCAAGTGGCAAAAATCCTGTAATGGAGCTCAATGAAAAAAGAAGAGGTCTCAAGTACGAACTCATCTCGGAGACTGGTGGAAGCCATGACAAACGCTTTGTGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021921-'31-26,'31-25,32-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=0.755 C2=0.741
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PU(90.5=85.1)
A:
PF0003520=dsrm=PD(6.3=7.5)
C2:
PF0003520=dsrm=PU(50.8=71.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGGCCTGGGCTTCAGTAT
R:
CCACCAGTCTCCGAGATGAGT
Band lengths:
254-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]