GgaEX6015585 @ galGal4
Exon Skipping
Gene
ENSGALG00000001187 | STRBP
Description
Spermatid perinuclear RNA-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q5ZIL4]
Coordinates
chr17:8908830-8912344:-
Coord C1 exon
chr17:8912145-8912344
Coord A exon
chr17:8910373-8910531
Coord C2 exon
chr17:8908830-8908964
Length
159 bp
Sequences
Splice sites
3' ss Seq
TACCTGTATTTTCGTTGTAGGTT
3' ss Score
9.61
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TACTAGATAGTAAAGCAATAGATCTCATGAATGCTCTGATGAGGCTGAACCAAATCAGGCCGGGGCTTCAGTATAAGCTGCTGTCCCAGTCTGGTCCAGTCCATGCCCCAGTCTTCACAATGTCTGTAGATGTTGATGGTACGACATATGAAGCATCAGGACCTTCTAAGAAAACAGCCAAGCTCCATGTGGCAGTGAAG
Seq A exon
GTTTTACAAGCAATGGGTTATCCAACTGGTTTTGATGCAGATGTTGAATGTGTAAGTTCTGATGAAAAATCAGATAATGAAGGTAAAAATGAAACAGTGTCTTCAATCTCAAGCAATAATACTGGAAATTCTACAGCTGACACCTCTGCTACCCTAGAG
Seq C2 exon
GTAAGAACTCAGGGTCCTATACTGACAGCAAGTGGTAAAAATCCGGTGATGGAGCTCAATGAAAAAAGAAGAGGTCTGAAGTATGAGCTCATCTCTGAGACAGGTGGAAGCCATGACAAGCGATTTGTGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001187-'35-33,'35-32,38-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.736 C2=0.644
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PU(90.5=85.1)
A:
PF0003520=dsrm=PD(6.3=7.5)
C2:
PF0003520=dsrm=PU(50.8=71.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCGGGGCTTCAGTATAAG
R:
ATGGCTTCCACCTGTCTCAGA
Band lengths:
258-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]