GgaEX6015585 @ galGal3
Exon Skipping
Gene
ENSGALG00000001187 | STRBP_CHICK
Description
NA
Coordinates
chr17:9620038-9623552:-
Coord C1 exon
chr17:9623353-9623552
Coord A exon
chr17:9621581-9621739
Coord C2 exon
chr17:9620038-9620172
Length
159 bp
Sequences
Splice sites
3' ss Seq
TACCTGTATTTTCGTTGTAGGTT
3' ss Score
9.61
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TACTAGATAGTAAAGCAATAGATCTCATGAATGCTCTGATGAGGCTGAACCAAATCAGGCCGGGGCTTCAGTATAAGCTGCTGTCCCAGTCTGGTCCAGTCCATGCCCCAGTCTTCACAATGTCTGTAGATGTTGATGGTACGACATATGAAGCATCAGGACCTTCTAAGAAAACAGCCAAGCTCCATGTGGCAGTGAAG
Seq A exon
GTTTTACAAGCAATGGGTTATCCAACTGGTTTTGATGCAGATGTTGAATGTGTAAGTTCTGATGAAAAATCAGATAATGAAGGTAAAAATGAAACAGTGTCTTCAATCTCAAGCAATAATACTGGAAATTCTACAGCTGACACCTCTGCTACCCTAGAG
Seq C2 exon
GTAAGAACTCAGGGTCCTATACTGACAGCAAGTGGTAAAAATCCGGTGATGGAGCTCAATGAAAAAAGAAGAGGTCTGAAGTATGAGCTCATCTCTGAGACAGGTGGAAGCCATGACAAGCGATTTGTGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001187-'16-23,'16-22,17-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.736 C2=0.644
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PU(90.5=85.1)
A:
PF0003520=dsrm=PD(6.3=7.5)
C2:
PF0003520=dsrm=PU(50.8=71.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCGGGGCTTCAGTATAAG
R:
ATGGCTTCCACCTGTCTCAGA
Band lengths:
258-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]