MmuEX6100932 @ mm10
Exon Skipping
Gene
ENSMUSG00000026915 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:MGI Symbol;Acc:MGI:104626]
Coordinates
chr2:37599121-37603134:-
Coord C1 exon
chr2:37602935-37603134
Coord A exon
chr2:37600745-37600903
Coord C2 exon
chr2:37599121-37599255
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTTTAATGGAATTTGTACAGGTT
3' ss Score
5.06
5' ss Seq
GAGGTATAC
5' ss Score
6.64
Exon sequences
Seq C1 exon
TTCTAGATAGTAAAGCAATAGACCTTATGAATGCACTAATGAGATTAAATCAGATCAGGCCCGGGCTTCAGTATAAGCTTTTGTCACAATCTGGCCCGGTCCATGCCCCAGTCTTCACAATGTCTGTAGATGTGGATGGCACAACATATGAAGCCTCAGGACCATCCAAGAAAACAGCAAAGCTTCATGTGGCAGTGAAG
Seq A exon
GTTTTACAGGCAATGGGATACCCAACAGGTTTTGATGCAGATATTGAATGTATCAGTTCCGATGAAAAATCAGATAATGAAAGCAAAAATGATACAGTATCTTCAAACTCAAGCAATAATACTGGAAATTCTACAACTGAGACCTCCAGTACCTTAGAG
Seq C2 exon
GTAAGAACTCAGGGTCCTATCCTCACAGCAAGTGGCAAAAATCCTGTGATGGAGCTCAATGAAAAAAGAAGAGGTCTCAAATATGAACTCATCTCAGAAACTGGTGGAAGCCATGACAAGCGCTTTGTAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026915-'39-43,'39-41,40-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=0.717 C2=0.707
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PU(90.5=85.1)
A:
PF0003520=dsrm=PD(6.3=7.5)
C2:
PF0003520=dsrm=PU(50.8=71.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGTCACAATCTGGCCCGG
R:
CAAAGCGCTTGTCATGGCTTC
Band lengths:
249-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types