RnoEX0087153 @ rn6
Exon Skipping
Gene
ENSRNOG00000010150 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:RGD Symbol;Acc:620673]
Coordinates
chr3:21850499-21859761:-
Coord C1 exon
chr3:21859562-21859761
Coord A exon
chr3:21852565-21852723
Coord C2 exon
chr3:21850499-21850633
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTTTAATGGAATTTGTACAGGTT
3' ss Score
5.06
5' ss Seq
GAGGTATAC
5' ss Score
6.64
Exon sequences
Seq C1 exon
TTCTGGATAGTAAAGCAATAGACCTTATGAATGCACTAATGAGATTAAATCAGATCAGGCCTGGGCTTCAGTATAAGCTTTTGTCGCAGTCTGGCCCGGTCCATGCCCCAGTCTTCACAATGTCGGTAGATGTGGACGGCACAACATACGAAGCCTCAGGACCATCCAAGAAAACAGCAAAGCTTCATGTGGCAGTGAAG
Seq A exon
GTTTTACAGGCAATGGGATACCCAACAGGTTTTGATGCAGATATTGAATGTATGAGTTCCGATGAAAAATCAGATAATGAAAGCAAAAATGATACAGTATCTTCAAACTCAAGCAATAATACTGGAAATTGTACAACTGAGACCTCCAGTACCTTAGAG
Seq C2 exon
GTAAGAACTCAGGGTCCTATCCTCACAGCAAGTGGCAAAAATCCTGTGATGGAGCTCAATGAAAAAAGAAGAGGTCTCAAGTATGAACTCATCTCAGAAACTGGTGGAAGCCATGACAAGCGCTTTGTAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010150-'27-25,'27-24,28-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=0.730 C2=0.678
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PU(90.5=85.1)
A:
PF0003520=dsrm=PD(6.3=7.5)
C2:
PF0003520=dsrm=PU(50.8=71.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTTTTGTCGCAGTCTGGC
R:
CAAAGCGCTTGTCATGGCTTC
Band lengths:
253-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]