DreEX0076146 @ danRer10
Exon Skipping
Gene
ENSDARG00000021455 | strbp
Description
spermatid perinuclear RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030729-18]
Coordinates
chr10:9888730-9898215:-
Coord C1 exon
chr10:9898004-9898215
Coord A exon
chr10:9890651-9890803
Coord C2 exon
chr10:9888730-9888864
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTTGTGGCCATGTGGTGCAGGTG
3' ss Score
5.14
5' ss Seq
GAGGTACAA
5' ss Score
5.13
Exon sequences
Seq C1 exon
CAGTTCTTGACAGTAAAGCAATAGACTCCAATCAGCCTATGAACGCTCTGATGCGCTTGAACCAGATCCGGCCGGGGCTGCAGTACAAACTGCTGTCTCAGTCAGGTCCGGTTCACGCCCCCGTCTTCACCATGTCCGTAGACGTCGACGGCACTGTTTACGAAGCCTCGGGATCCTCCAAGAAGACCGCCAAGTTGCACGTGGCAGTAAAG
Seq A exon
GTGCTGCAGGCGATGGGTTACCCTACTGGCTTCGACACAGACCTGGACTCCATGAGTGCAGATGAGAAGTCAGATGGCGAGGGAAAGAGTGAATCCTCCACACACTCAAGCAATAACACAACACACTCCTCAGACAGCTCCAACACATTGGAG
Seq C2 exon
GTACGAACTCAGGGTCCTATTTTGACGGCCAGCGGGAAGAACCCAGTCATGGAGCTGAATGAGAAGCGGCGCGGCCTGAAATACGAGCTCATCTCAGAGAGTGGAGGAAGTCACGACAAACGCTTCGTCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021455-'21-21,'21-20,22-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.282 A=0.784 C2=0.711
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PU(90.6=81.7)
A:
PF0003520=dsrm=PD(6.2=7.8)
C2:
PF0003520=dsrm=PU(50.8=71.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGCGCTTGAACCAGATCC
R:
ATGAGCTCGTATTTCAGGCCG
Band lengths:
256-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]