BtaEX6046064 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003610 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr11:94578830-94588605:-
Coord C1 exon
chr11:94588534-94588605
Coord A exon
chr11:94587270-94587326
Coord C2 exon
chr11:94578830-94578961
Length
57 bp
Sequences
Splice sites
3' ss Seq
TAAATTAATTTTTCATGCAGGCA
3' ss Score
6.41
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AAAGGAAGTGGAGCAATTTTGAATACTGTAAAAACGAAAGCAAACCCGGCCATGAAGACTGTCTATAAGTTC
Seq A exon
GCAAAAGATCATGCAAAAATGGGAATAAAAGAGGTGAAAAACCGCTTGAAGCAAAAG
Seq C2 exon
GACATCACTGAGAATGGCTGTGCCCCCACCACAGAAGAGCAGCTGCCAAAGACTGTGCCGTCCCCACTGGTAGAGGCCAAGGACCCCAAGTTCCGAGAGGACCGGCGGCCAATCACAGTCCACTTTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003610-'50-59,'50-58,51-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.474 C2=0.985
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACGAAAGCAAACCCGGC
R:
CTCTCGGAACTTGGGGTCCTT
Band lengths:
142-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]