GgaEX0001250 @ galGal4
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr17:9034090-9059270:-
Coord C1 exon
chr17:9059199-9059270
Coord A exon
chr17:9058089-9058145
Coord C2 exon
chr17:9034090-9034178
Length
57 bp
Sequences
Splice sites
3' ss Seq
TAAATTAATTTTTCATGCAGGCA
3' ss Score
6.41
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AAAGGAAGTGGAGCCATTTTAAACACAGTAAAGACCAAAGCTAACCCTGCCATGAAGACTGTCTATAAGTTC
Seq A exon
GCAAAAGATCATGCAAAAATGGGAATAAAAGAAGTGAAAAACCGCTTGAAGCAAAAG
Seq C2 exon
GTTCGTCCTCCAAGACCTCATATTGTTAAGAGACCCAAGAGCAACATTGCTGTGGAAGCAAGAAGGACTTCCATTTCCAGTCCAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157_MULTIEX2-16/19=15-C2
Average complexity
C2
Mappability confidence:
94%=94=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.242 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000001740fB6704
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGACCAAAGCTAACCCTGCC
R:
TGTTCTGGACTGGAAATGGAAGT
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]