GgaEX0001250 @ galGal3
Exon Skipping
Gene
ENSGALG00000001157 | DENND1A
Description
NA
Coordinates
chr17:9765664-9772273:-
Coord C1 exon
chr17:9772202-9772273
Coord A exon
chr17:9771092-9771148
Coord C2 exon
chr17:9765664-9765795
Length
57 bp
Sequences
Splice sites
3' ss Seq
TAAATTAATTTTTCATGCAGGCA
3' ss Score
6.41
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AAAGGAAGTGGAGCCATTTTAAACACAGTAAAGACCAAAGCTAACCCTGCCATGAAGACTGTCTATAAGTTC
Seq A exon
GCAAAAGATCATGCAAAAATGGGAATAAAAGAAGTGAAAAACCGCTTGAAGCAAAAG
Seq C2 exon
GACATAGCTGAGAATGGGTGTTCTGCAGCACCAGAGCAGTCTCTACCAAGACCAGCACCTTCTCCATTGGTTGAAAAGAAGGACACTAAATTAAGAGAGGACAGAAGACCAATCACAGTACATTTTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001157-'25-34,'25-33,27-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=0.242 C2=0.941
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGCCATGAAGACTGTCT
R:
ACTGTGATTGGTCTTCTGTCCT
Band lengths:
148-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]