RnoEX0027094 @ rn6
Exon Skipping
Gene
ENSRNOG00000010526 | Dennd1a
Description
DENN domain containing 1A [Source:RGD Symbol;Acc:1307927]
Coordinates
chr3:22106402-22115580:-
Coord C1 exon
chr3:22115509-22115580
Coord A exon
chr3:22113971-22114027
Coord C2 exon
chr3:22106402-22106533
Length
57 bp
Sequences
Splice sites
3' ss Seq
TAAATTAATTTTTCATGCAGGCA
3' ss Score
6.41
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AAAGGAAGTGGAGCGATTCTGAATACTGTAAAAACAAAAGCTAACCCAGCCATGAAGACTGTCTACAAGTTT
Seq A exon
GCAAAAGATCATGCAAAAATGGGAATAAAAGAGGTGAAAAACCGCTTGAAGCAAAAG
Seq C2 exon
GACATCACCGAGAATGGCTGTGCATCCTCTGCAGAAGATCCACTGCCAAAGACCATACCATCCCCACTGGCAGAGGCCAAGGACCCCAAACTTCGAGAAGACCGGAGACCAATCACAGTCCACTTTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010526-'46-65,'46-64,48-65
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=0.408 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000091747fB4025
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGCCATGAAGACTGTCT
R:
CGGTCTTCTCGAAGTTTGGGG
Band lengths:
133-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]