DreEX0003538 @ danRer10
Exon Skipping
Gene
ENSDARG00000014592 | DENND1A
Description
DENN/MADD domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
Coordinates
chr21:8362572-8369570:+
Coord C1 exon
chr21:8362572-8362643
Coord A exon
chr21:8363351-8363407
Coord C2 exon
chr21:8369500-8369570
Length
57 bp
Sequences
Splice sites
3' ss Seq
AAATCTCTCATCCTCTGCAGGCC
3' ss Score
8.71
5' ss Seq
AAGGTACTC
5' ss Score
7.46
Exon sequences
Seq C1 exon
AAAGGCAGCGGCGCAATTCTGAACACAGTGAAGACAAAGGCAAATCCTGCAATGAAGACAGTTTACAAATTT
Seq A exon
GCCAAAGACCATGCCAAGATGGGCATCAAAGAAGTCAAGAGTCGACTCAAACAAAAG
Seq C2 exon
GCTCGACCTCCTCGGCCATTGGTGGCAAAGAGACCTCGCAGTAACATTGGTGTAGAAGGAAGCCCTGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014592_MULTIEX1-16/18=15-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.526 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGCAATTCTGAACACAGTG
R:
TTCAGGGCTTCCTTCTACACCA
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]