MmuEX6100949 @ mm10
Exon Skipping
Gene
ENSMUSG00000035392 | Dennd1a
Description
DENN/MADD domain containing 1A [Source:MGI Symbol;Acc:MGI:2442794]
Coordinates
chr2:37844777-37854064:-
Coord C1 exon
chr2:37853993-37854064
Coord A exon
chr2:37852396-37852452
Coord C2 exon
chr2:37844777-37844908
Length
57 bp
Sequences
Splice sites
3' ss Seq
TAAATTAATTTTTCATGCAGGCA
3' ss Score
6.41
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AAAGGAAGTGGTGCGATTCTGAATACTGTAAAAACAAAAGCTAACCCAGCCATGAAGACTGTCTACAAGTTT
Seq A exon
GCAAAAGATCATGCAAAAATGGGAATAAAGGAGGTGAAAAACCGCTTGAAGCAAAAG
Seq C2 exon
GACATCACGGAGAACGGCTGTGTGTCCTCTGCAGAAGATCCACTGCCAAAGACCATGCCATCCCCACAGGCAGAGACCCAGGACCCCAGACTTCGAGAAGACCGGAGACCAATCACAGTCCACTTTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035392-'67-71,'67-69,69-71
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.239 A=0.543 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGCCATGAAGACTGTCT
R:
GGTCTTCTCGAAGTCTGGGGT
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types