BtaEX6046100 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009017 | NR5A1
Description
Bos taurus nuclear receptor subfamily 5, group A, member 1 (NR5A1), mRNA. [Source:RefSeq mRNA;Acc:NM_174403]
Coordinates
chr11:95521712-95532239:-
Coord C1 exon
chr11:95531614-95532239
Coord A exon
chr11:95524479-95524598
Coord C2 exon
chr11:95521712-95521859
Length
120 bp
Sequences
Splice sites
3' ss Seq
GGTGTGCCTCTTCCTTGCAGGTG
3' ss Score
11.3
5' ss Seq
GAGGTGACC
5' ss Score
5.57
Exon sequences
Seq C1 exon
CCCCAGTGGGGGTGCCCCCGCCGCCCCCTCCCCCACCGGACTACATGCTGCCCCATGGCCTGCATGCATCTGAGCCCAAGGGCCTGGCCTCAGGTCCACCAGCTGGGCCACTGGGCGACTTTGGGGCCCCAGCGTTGCCTATGGCTGTGCCCAGCGCCCACGGGCCACTGGCTGGCTACCTCTACCCTGCCTTCCCTGGCCGCGCCATCAAGTCTGAGTACCCAGAGCCCTATGCCAGCCCCCCACAGCCCGGGCCACCCTACGGCTACCCAGAGCCCTTCTCGGGGGGGCCTGGTGTGCCCGAGCTTATCCTCCAGCTGCTGCAGCTGGAGCCAGATGAGGACCAAGTGCGGGCACGCATCGTGGGCTGCCTGCAGGAACCGGCCAAAGGCCGCCCCGACCAGCCTGCGCCCTTCAGCCTCCTGTGCAGGATGGCCGACCAGACCTTCATCTCCATCGTGGACTGGGCACGCAGGTGCATGGTCTTCAAGGAGCTGGAG
Seq A exon
GTGGCCGACCAGATGACACTGCTGCAGAACTGCTGGAGCGAGCTGCTGGTTTTTGACCACATCTACCGTCAGATTCAGCATGGCAAGGAGGGCAGCATCCTGCTGGTCACAGGGCAGGAG
Seq C2 exon
GTGGAGCTGACCACGGTGGCCGCCCAGGCGGGCTCGCTGCTGCACAGCCTGGTGCTTCGGGCGCAGGAGTTGGTGCTGCAGCTGCACGCGCTGCAGCTGGATCGCCAGGAGTTCGTCTGCCTCAAGTTCCTCATTCTCTTCAGCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009017-'11-5,'11-4,13-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(19.0=18.7)
A:
PF0010425=Hormone_recep=FE(19.0=100)
C2:
PF0010425=Hormone_recep=FE(23.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGAACCGGCCAAAG
R:
ACTTGAGGCAGACGAACTCCT
Band lengths:
256-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]