GgaEX6015615 @ galGal4
Exon Skipping
Gene
ENSGALG00000001080 | NR5A1
Description
steroidogenic factor 1 [Source:RefSeq peptide;Acc:NP_990408]
Coordinates
chr17:9433624-9439906:-
Coord C1 exon
chr17:9439266-9439906
Coord A exon
chr17:9433908-9434027
Coord C2 exon
chr17:9433624-9433771
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTGGCTCTGCTCTCTTACAGGTG
3' ss Score
11.46
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CTGTGCAGAATGACTACGGGCTGTCCTCCACCATCCACAGCATCCACGCCATGGCCAAGACGCTGCCGCCCAACCCCGCCGCCCTGACGCCTGCTGACTATGAACGCGGCCCCTACGGGACCCCCTCCCTGGCCATGACTGTGCCCGGCCACACGCCGCTCGCCGGCTACCACTACCCCTCCTTCCCCAACCGCGCCATCAAGTCTGAGTACCCCGACCACTACAGTGCTGCACATGAGGCCGTGCCCACCTATGCATACCCAGAGACCTACCCCAGCAGTTCCCCACCCGACATCCCCGAGGTCATCCTGAAGCTGCTGCAGCTGGAGCCTGACGAGGCGCAGGTGAAGGCTCGCATCCTGTCCTGCCTGCAGCAGGAGCAGGGCAAGGGCCGGCATGAGAAGCTCAGTACCTTTGGCCTCATGTGCAAGATGGCTGACCAGACGCTGTTCTCCATCGTGGAGTGGGCGCGGAGCTGCATCTTCTTCAAGGAGCTGGAG
Seq A exon
GTGGGAGACCAGATGAAGCTGCTGCAGAACTGCTGGAGCGAGCTGCTGGTGTTCGACCACGTGTACCGGCAGCTGCAGCACGGCAAAGAGCACAGTGTGCTGCTGGTCACCGGGCAGGAG
Seq C2 exon
GTGGATCTGTCAGCAGTGGCGGCGCAGGCGGGCTCCATCCTGCACTCCCTGGTGCTGCGGGCACAGGAACTGGTCCTGCACCTGCACTCACTGCAGGTGGACCGGCAGGAGTTCGTCTGCCTCAAATTCCTGATCCTCTTCAGCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001080-'6-10,'6-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(20.6=20.1)
A:
PF0010425=Hormone_recep=FE(18.7=100)
C2:
PF0010425=Hormone_recep=FE(23.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCAGTACCTTTGGCCTCA
R:
CGAGGCTGAAGAGGATCAGGA
Band lengths:
246-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]