RnoEX0060877 @ rn6
Exon Skipping
Gene
ENSRNOG00000012682 | Nr5a1
Description
nuclear receptor subfamily 5, group A, member 1 [Source:RGD Symbol;Acc:68350]
Coordinates
chr3:23006360-23014565:-
Coord C1 exon
chr3:23013937-23014565
Coord A exon
chr3:23008165-23008284
Coord C2 exon
chr3:23006360-23006507
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGCATCATTCTACCCTACAGGTG
3' ss Score
8.87
5' ss Seq
GAGGTGACT
5' ss Score
5.88
Exon sequences
Seq C1 exon
CGATGGGGGTTCCCCCGCCACCCCCTCCCCCACCGGACTACATGTTACCCCCTAGCCTGCATGCACCGGAGCCCAAGGCCCTGGTCTCTGGCCCACCCAGTGGGCCGCTGGGTGACTTTGGAGCCCCATCTCTGCCCATGGCCGTGCCTGGTCCCCACGGGCCTCTGGCTGGCTACCTCTATCCTGCCTTCTCTAACCGCACCATCAAGTCTGAGTATCCAGAGCCCTACGCCAGCCCCCCTCAACAGCCAGGGCCACCCTACAGCTATCCGGAGCCCTTCTCAGGAGGGCCCAATGTACCAGAGCTCATATTGCAGCTGCTGCAACTAGAGCCAGAGGAGGACCAGGTGCGTGCTCGCATCGTGGGCTGCCTGCAGGAGCCAGCCAAAAGCCGCCCTGACCAGCCAGCGCCCTTCAGCCTCCTCTGCAGGATGGCGGACCAGACCTTTATCTCCATTGTCGACTGGGCACGAAGGTGCATGGTATTTAAGGAGCTGGAG
Seq A exon
GTGGCTGACCAGATGACACTGCTGCAGAACTGCTGGAGTGAGCTGCTGGTGCTGGACCACATCTACCGCCAGGTCCAGTACGGCAAGGAAGACAGCATCTTGCTGGTCACTGGACAGGAG
Seq C2 exon
GTGGAGCTGAGCACGGTGGCTGTGCAGGCTGGCTCCCTGCTGCACAGCCTGGTGCTGCGGGCACAGGAGTTGGTGCTGCAGCTGCATGCCCTGCAACTGGACCGCCAGGAGTTTGTCTGTCTCAAGTTCCTCATCCTCTTCAGCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012682-'11-4,'11-3,13-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(19.8=19.5)
A:
PF0010425=Hormone_recep=FE(18.8=100)
C2:
PF0010425=Hormone_recep=FE(23.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGAGCCAGAGGAGGACCAG
R:
CTGCAGCACCAACTCCTGTG
Band lengths:
255-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]