GgaEX6015615 @ galGal3
Exon Skipping
Gene
ENSGALG00000001080 | NR5A1
Description
NA
Coordinates
chr17:10152486-10159827:-
Coord C1 exon
chr17:10159187-10159827
Coord A exon
chr17:10152770-10152889
Coord C2 exon
chr17:10152486-10152633
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTGGCTCTGCTCTCTTACAGGTG
3' ss Score
11.46
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CTGTGCAGAATGACTACGGGCTGTCCTCCACCATCCACAGCATCCACGCCATGGCCAAGACGCTGCCGCCCAACCCCGCCGCCCTGACGCCTGCTGACTATGAACGCGGCCCCTACGGGACCCCCTCCCTGGCCATGACTGTGCCCGGCCACACGCCGCTCGCCGGCTACCACTACCCCTCCTTCCCCAACCGCGCCATCAAGTCTGAGTACCCCGACCACTACAGTGCTGCACATGAGGCCGTGCCCACCTATGCATACCCAGAGACCTACCCCAGCAGTTCCCCACCCGACATCCCCGAGGTCATCCTGAAGCTGCTGCAGCTGGAGCCTGACGAGGCGCAGGTGAAGGCTCGCATCCTGTCCTGCCTGCAGCAGGAGCAGGGCAAGGGCCGGCATGAGAAGCTCAGTACCTTTGGCCTCATGTGCAAGATGGCTGACCAGACGCTGTTCTCCATCGTGGAGTGGGCGCGGAGCTGCATCTTCTTCAAGGAGCTGGAG
Seq A exon
GTGGGAGACCAGATGAAGCTGCTGCAGAACTGCTGGAGCGAGCTGCTGGTGTTCGACCACGTGTACCGGCAGCTGCAGCACGGCAAAGAGCACAGTGTGCTGCTGGTCACCGGGCAGGAG
Seq C2 exon
GTGGATCTGTCAGCAGTGGCGGCGCAGGCGGGCTCCATCCTGCACTCCCTGGTGCTGCGGGCACAGGAACTGGTCCTGCACCTGCACTCACTGCAGGTGGACCGGCAGGAGTTCGTCTGCCTCAAATTCCTGATCCTCTTCAGCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001080-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0010425=Hormone_recep=PU(21.6=97.2)
C2:
PF0010425=Hormone_recep=FE(30.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCAGTACCTTTGGCCTCA
R:
CGAGGCTGAAGAGGATCAGGA
Band lengths:
246-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]