DreEX6052109 @ danRer10
Exon Skipping
Gene
ENSDARG00000103176 | nr5a1a
Description
nuclear receptor subfamily 5, group A, member 1a [Source:ZFIN;Acc:ZDB-GENE-010504-1]
Coordinates
chr8:52851724-52860724:-
Coord C1 exon
chr8:52860566-52860724
Coord A exon
chr8:52854475-52854594
Coord C2 exon
chr8:52851724-52851868
Length
120 bp
Sequences
Splice sites
3' ss Seq
CGTGTTGATTTGTGATTCAGGTG
3' ss Score
7.91
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTGAGAGGAAAGATCTGCGCGTATCTCCACCAGGAGCAGAGTGGCAGAGGAAAGCTGGAGAAATCGCGACCCTTCAGCCTGCTGTGTGTCATGGCCGACCAGACGCTCTTCTCTATCGTGGAGTGGGCGAGAAGCTGTGTCTTCTTCAAGGAACTAAAG
Seq A exon
GTGGGCGATCAGATGCGTCTGCTGCATAACTGCTGGAGCGAGCTGCTGCTTCTGGATCACATCTGCAGACAGGTGCATCATGGGAGAGACGGCAGCCTGCTGCTCATCACAGGACAGGAG
Seq C2 exon
GTGGAGCTGTCGGCGGTGTTGGACGCTGGTCCTCCTCTGTCCAGCATGGTTGAGCGAGGGCAGGATCTGTCCCGCCGGCTCCAGCTGCTGCAGGTGGACAGCAGAGAGATGGCCTGTCTGAAGTTCCTCATCCTCTTCAACCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103176-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(23.0=86.8)
A:
PF0010425=Hormone_recep=FE(19.5=100)
C2:
PF0010425=Hormone_recep=PD(34.8=95.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAGCTGGAGAAATCGCG
R:
TGAGGAACTTCAGACAGGCCA
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]