MmuEX6100970 @ mm10
Exon Skipping
Gene
ENSMUSG00000026751 | Nr5a1
Description
nuclear receptor subfamily 5, group A, member 1 [Source:MGI Symbol;Acc:MGI:1346833]
Coordinates
chr2:38700175-38708539:-
Coord C1 exon
chr2:38707911-38708539
Coord A exon
chr2:38701967-38702086
Coord C2 exon
chr2:38700175-38700322
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGCATTATTCTTCCCTACAGGTG
3' ss Score
11.53
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
CGATGGGGGTGCCCCCGCCACCCCCTCCCCCACCGGACTACATGTTACCCCCTAGCCTGCACGCACCGGAGCCCAAGGCCCTGGTCTCTGGCCCACCCAGTGGGCCGCTGGGTGACTTTGGAGCCCCATCTCTACCCATGGCTGTGCCTGGTCCCCACGGACCTCTGGCTGGCTACCTCTATCCTGCCTTCTCTAACCGCACCATCAAGTCTGAGTATCCAGAGCCCTATGCCAGCCCCCCACAACAGCCAGGGCCACCCTACAGCTATCCAGAGCCCTTCTCAGGAGGGCCCAATGTACCAGAGCTCATATTGCAGCTGCTGCAACTAGAGCCAGAGGAGGACCAGGTGCGCGCTCGCATCGTGGGCTGTCTGCAGGAGCCAGCCAAAAGCCGCTCTGACCAGCCAGCGCCCTTCAGCCTCCTCTGCAGAATGGCCGACCAGACCTTTATCTCCATTGTCGACTGGGCACGAAGGTGCATGGTCTTTAAGGAGCTGGAG
Seq A exon
GTGGCTGACCAGATGACACTGCTGCAGAACTGTTGGAGCGAGCTGCTGGTGTTGGACCACATCTACCGCCAGGTCCAGTACGGCAAGGAAGACAGCATCCTGCTGGTTACTGGACAGGAG
Seq C2 exon
GTGGAGCTGAGCACAGTGGCTGTGCAGGCTGGCTCCCTGCTGCACAGCCTGGTGCTGCGGGCCCAAGAGTTAGTGCTCCAGTTGCATGCACTGCAGCTGGACCGCCAGGAGTTCGTCTGTCTCAAGTTCCTCATCCTCTTCAGCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026751-'14-7,'14-6,17-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(19.8=19.5)
A:
PF0010425=Hormone_recep=FE(18.8=100)
C2:
PF0010425=Hormone_recep=FE(23.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGAGCCAGAGGAGGACCAG
R:
CTGGAGCACTAACTCTTGGGC
Band lengths:
255-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types