DreEX6083160 @ danRer10
Exon Skipping
Gene
ENSDARG00000023362 | nr5a1b
Description
nuclear receptor subfamily 5, group A, member 1b [Source:ZFIN;Acc:ZDB-GENE-040702-6]
Coordinates
chr21:8190882-8220758:+
Coord C1 exon
chr21:8190882-8191624
Coord A exon
chr21:8220144-8220263
Coord C2 exon
chr21:8220611-8220758
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTATTCCCTGTGCTCATCAGGTT
3' ss Score
6.77
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GCAGCCTCTACGCATCCAGCTCCCTGAGTTTATCCGTCCCCATCCCGGCCCACACTCCTCTCCCAGCACAATACCCCTATCCAAATCTGCCCAGCCGTGCCATAAAGTCTGAGTATCCTGACCACTACACAAGCTCAGAGCATTACACCAGTGCCAGCTCCCCAGAGTCAGTGCCAGGCTACACGTATATCGAGCAAACACGGGTGTCCAGCAGCCCGCAGGTGGTGGCACCGGGTTTAACAGTGCCGCCTTTGGTTCTGGAGTTTGTTCGCTGTGAGCAGGATGAGCTCCAGGTGCAAAGCAAAATAAGCGCTCACCTGGCGCACCTGCAGCAGGAGCAGAACTCACGGAGCACGGCAGCCAATCAGGAGCAGAGCTCCCGCCTCGCAGCCAAACCCGAGCGGCTCAGCACATTTGGCCTCATGTGCCACATGGCCGACCAGACGCTCTTCTCTATCGTGGAGTGGGCACGAAGCTGCATCTTCTTTAAGGAGCTTAAG
Seq A exon
GTTGGAGATCAGATGAAGTTGCTGCATAACTGCTGGAGTGAACTTCTAGTGCTGGACTATGTTGCCAGACAGTTGCATCATGGGAAAGAGGACAGTGTGCTTCTCATTACTGGACAGGAG
Seq C2 exon
GTGGAGCTTGCATCTCTCCTGGCCCAGGCAGGGGTCACTTTAAGCGGGATGATCCAGAGAGGACAGGAGCTGGTGCAGCGTCTACAGGAGCTACAGCTGGACCGCAGAGAAACCGCCTGCCTCAAATACCTCATCCTCTTTAACCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023362-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.351 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(22.6=19.4)
A:
PF0010425=Hormone_recep=FE(18.4=100)
C2:
PF0010425=Hormone_recep=FE(23.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTCGCTGTGAGCAGGATG
R:
CAGGAGAGATGCAAGCTCCAC
Band lengths:
257-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]