BtaEX6046189 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023843 | RALGPS1
Description
Bos taurus Ral GEF with PH domain and SH3 binding motif 1 (RALGPS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001193100]
Coordinates
chr11:97799334-97925379:+
Coord C1 exon
chr11:97799334-97799426
Coord A exon
chr11:97818055-97818181
Coord C2 exon
chr11:97925242-97925379
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTTTTCTTCCACCAGCTT
3' ss Score
8.76
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
AAACTTCTAGAACTCAACAACCTTCATTCTCTCATGTCTGTGGTGTCAGCATTGCAGAGCGCACCCATCTTCAGGCTGACGAAAACCTGGGCT
Seq A exon
CTTTTGAATCGAAAAGATAAGACCACCTTTGAGAAACTGGACTACCTGATGTCCAAAGAAGATAATTACAAGCGGACTCGGGAATATATCCGAAGCCTGAAGATGGTTCCCAGTATTCCCTATCTAG
Seq C2 exon
GCATCTATCTTCTGGATTTAATCTACATTGATTCTGCGTATCCTGCCTCAGGCAGCATCATGGAAAACGAACAAAGATCCAATCAGATGAACAATATTCTCCGAATAATTGCTGACTTACAAGTTTCCTGCAGCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023843-'19-27,'19-18,20-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.064
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.4=100)
A:
PF0061714=RasGEF=FE(21.5=100)
C2:
PF0061714=RasGEF=PD(19.0=78.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTAGAACTCAACAACCTTCA
R:
AGCTGCAGGAAACTTGTAAGTCA
Band lengths:
226-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]