RnoEX6016513 @ rn6
Exon Skipping
Gene
ENSRNOG00000016910 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:RGD Symbol;Acc:2319500]
Coordinates
chr3:12217562-12320091:-
Coord C1 exon
chr3:12319999-12320091
Coord A exon
chr3:12306722-12306848
Coord C2 exon
chr3:12217562-12217699
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATAATTTCTTTTCATTCCAGCTT
3' ss Score
7.54
5' ss Seq
TAGGTATGA
5' ss Score
6.99
Exon sequences
Seq C1 exon
AAACTTCTAGAACTCAACAACCTTCATTCTCTCATGTCTGTGGTGTCAGCATTACAAAGTGCTCCCATCTTCAGGCTGACAAAAACCTGGGCT
Seq A exon
CTTTTAAATCGCAAAGACAAGACCACTTTCGAGAAACTGGACTACCTGATGTCAAAAGAAGACAACTACAAGCGAACTCGGGACTACATCCGAAGTCTGAAGATGGTGCCCAGCATTCCTTATCTAG
Seq C2 exon
GAATCTACCTTCTGGACTTGATCTACATTGATTCTGCATACCCTGCCTCTGGCAGCATCATGGAAAACGAACAAAGATCCAACCAGATGAACAACATCCTCCGAATCATTGCCGATTTACAAGTTTCCTGCAGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016910-'19-21,'19-15,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.250 C2=0.144
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.4=100)
A:
PF0061714=RasGEF=FE(21.5=100)
C2:
PF0061714=RasGEF=PD(19.0=78.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCTAGAACTCAACAACCTTCA
R:
GCTGCAGGAAACTTGTAAATCGG
Band lengths:
226-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]