HsaEX6063067 @ hg19
Exon Skipping
Gene
ENSG00000136828 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:16851]
Coordinates
chr9:129815126-129928485:+
Coord C1 exon
chr9:129815126-129815218
Coord A exon
chr9:129831509-129831635
Coord C2 exon
chr9:129928348-129928485
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATATTTTCTTCTCATTCTAGCTT
3' ss Score
9.01
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
AAACTTCTAGAACTCAACAACCTTCATTCTCTCATGTCTGTGGTATCAGCATTACAAAGTGCTCCCATCTTCAGGCTGACAAAAACCTGGGCT
Seq A exon
CTTTTAAATCGAAAAGACAAGACTACCTTTGAGAAATTGGACTACCTGATGTCGAAAGAAGATAATTACAAGCGGACACGGGAATATATCCGAAGCCTGAAGATGGTTCCAAGTATTCCCTATCTAG
Seq C2 exon
GAATCTATCTTCTGGATTTAATCTACATTGATTCTGCATATCCTGCCTCAGGCAGTATCATGGAAAATGAACAAAGATCCAATCAGATGAACAATATTCTTCGAATAATTGCTGATTTACAAGTTTCCTGCAGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136828-'14-14,'14-12,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.052
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PD(0.1=0.0),PF0061714=RasGEF=FE(40.5=100)
A:
PF0061714=RasGEF=FE(21.5=100)
C2:
PF0061714=RasGEF=PD(19.0=78.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCTAGAACTCAACAACCTTCA
R:
GCTGCAGGAAACTTGTAAATCAGC
Band lengths:
226-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)