DreEX0060663 @ danRer10
Exon Skipping
Gene
ENSDARG00000068370 | ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:ZFIN;Acc:ZDB-GENE-070720-16]
Coordinates
chr8:32940266-33065585:-
Coord C1 exon
chr8:33065493-33065585
Coord A exon
chr8:33047754-33047880
Coord C2 exon
chr8:32940266-32940403
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCATTTTCTGTTCTGAACAGTTG
3' ss Score
9.13
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
AAACTACTGGAGCTGAATAACCTGCACTCCTTGGTGTCAGTGGTCTCAGCCCTTCAGAGTGCTCCCATCTTCAGACTCAGCAAAACCTGGGCG
Seq A exon
TTGATCAGTCGGAAGGACAAGGCCACCTTTGAGAAGCTTGACTTCCTGACGTCAAAGGAAGAGAATTACAACCGCATGAGAGAGTACACCCGCTCGCTCAAAATGGCCCCCTGCATCCCCTACCTTG
Seq C2 exon
GAATTTACCTGTTTGACATGACCTACATTGACTCCGCCTACCCTGCTTCTGACAGCATCATCGAGACAGAGCAAAGAACCAATCAGATGAACAATCTACTCCGCATCATTTCCGATCTACAGGTGTCCTGTAAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068370-'7-10,'7-8,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.2=100)
A:
PF0061714=RasGEF=FE(21.2=100)
C2:
PF0061714=RasGEF=PD(20.2=85.1)
Main Skipping Isoform:
ENSDART00000098840fB5105
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGCTGAATAACCTGCAC
R:
CAGGACACCTGTAGATCGGAA
Band lengths:
218-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]