GgaEX6015671 @ galGal3
Exon Skipping
Gene
ENSGALG00000000906 | RALGPS1
Description
NA
Coordinates
chr17:11026712-11061546:+
Coord C1 exon
chr17:11026712-11026804
Coord A exon
chr17:11028006-11028132
Coord C2 exon
chr17:11061409-11061546
Length
127 bp
Sequences
Splice sites
3' ss Seq
AATCTTTTTTTTCTATGTAGCTC
3' ss Score
7.89
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AAGCTTCTAGAGCTGAATAACCTCCATTCTCTTATGTCTGTGGTGTCAGCACTGCAAAGTGCACCCATCTTCAGACTGACCAAAACCTGGGCT
Seq A exon
CTCTTGAATCGCAAAGACAAGGCCACTTTTGAGAAGTTAGACTACTTACTTTCTAAAGAGGACAATTATAAAAGAACACGAGAGTACATCAGAAGCTTAAAAATGGTTCCAAGTATTCCATATTTAG
Seq C2 exon
GAATTTATCTCTTCGACTTAATCTACATTGATTCTGCATATCCTGCTTCAGGCAGCATTATGGAAAATGAACAAAGATCCAATCAAATGAACAATATTCTCCGAATAATAGCTGATCTGCAAGTCTCCTGTAACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906-'5-12,'5-6,6-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(15.4=100)
A:
PF0061714=RasGEF=FE(21.5=100)
C2:
PF0061714=RasGEF=PD(19.0=78.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTAGAGCTGAATAACCTCCA
R:
TAGTTACAGGAGACTTGCAGATCA
Band lengths:
226-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]