MmuEX0038670 @ mm10
Exon Skipping
Gene
ENSMUSG00000038831 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:MGI Symbol;Acc:MGI:1922008]
Coordinates
chr2:33174411-33273653:-
Coord C1 exon
chr2:33273561-33273653
Coord A exon
chr2:33260478-33260604
Coord C2 exon
chr2:33174411-33174548
Length
127 bp
Sequences
Splice sites
3' ss Seq
TAAATTTCTTTTCATTCCAGCTT
3' ss Score
7.29
5' ss Seq
TAGGTATGA
5' ss Score
6.99
Exon sequences
Seq C1 exon
AAACTTCTAGAACTGAACAACCTTCATTCTCTCATGTCTGTGGTGTCAGCATTACAAAGTGCTCCCATCTTCAGGCTGACAAAAACCTGGGCT
Seq A exon
CTTTTGAATCGAAAAGACAAGACTACTTTTGAGAAACTTGACTACCTGATGTCCAAAGAAGACAACTACAAGCGAACCCGGGACTACATCCGAAGTCTGAAGATGGTGCCCAGCATTCCCTATCTAG
Seq C2 exon
GAATCTACCTTCTGGACTTGATCTACATTGATTCTGCATACCCTGCCTCTGGCAGCATCATGGAAAACGAACAACGATCCAACCAGATGAACAACATCCTCCGAATCATTGCCGATTTACAAGTTTCCTGTAGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038831_MULTIEX2-8/8=7-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(16.1=100)
A:
PF0061714=RasGEF=FE(22.6=100)
C2:
PF0061714=RasGEF=PD(19.4=76.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCTAGAACTGAACAACCTTCA
R:
GCTACAGGAAACTTGTAAATCGGC
Band lengths:
226-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types