BtaEX6046226 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012844 | LRSAM1
Description
Bos taurus leucine rich repeat and sterile alpha motif containing 1 (LRSAM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075296]
Coordinates
chr11:98226621-98229896:+
Coord C1 exon
chr11:98226621-98226702
Coord A exon
chr11:98228126-98228262
Coord C2 exon
chr11:98229181-98229896
Length
137 bp
Sequences
Splice sites
3' ss Seq
GCCTCTCTCTGTCCCCACAGAGC
3' ss Score
13.13
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTGGGCGTCTCGGAGGCCGGCCTGCAGCACGAGATCCTGCGCAGAGCCCAGGAGCTGCTGGACGCCGCCAGAGCCCAGCCAG
Seq A exon
AGCTGCTGAAGCCACCTGAGGGCGGGGTCCTGCCCACAGCCCCCGAGGAGCTGCCTGAGGCAGTGAGACCCTCAGCTCCCCCCGCAGAGCTGCTGGAGGTGCAGACCTCAGAGTGTGTGGTGTGCCTGGAACGGGAG
Seq C2 exon
GCCCAGATGATCTTCCTCAACTGCGGCCACGTCTGCTGCTGCCAGCCGTGCTCCCAGCCCCTGCGCACCTGCCCACTGTGCCGCCAGGACATCACCCAGCGCCTCCGCATCTATCACAGCAGCTGAGCGCCAGCCTCTGCCGCCCTCGGGCCCAGGGCTGTGCTCCCTCCTGTTCCCCACGGGCTGGTCCGGCCCTGCACCACACCGTGCCCCCGTCCTGGGCCAGGCTGAGACAGGAGCGTTCCTGCCCAAGTACTGAGCGGTTTAAATCCTGTAGAGGGGGTGGGGGGACCCCTCGCGGCAGGACCACAGGGTCTGGGGTGGGAGCAGCGGCAGCCACACCTCCGTCTGAGCCAGCACCGAGGGTTCCAGCTGCCTACGGTGGTCACAGCCCCTCCTGGAGCCTTGGTGTCTTCCTCAGGGGAACCCGGGCAGTGCCGTCCCACTCAGCAGGGGTGGTGGGAGCCCTGGCCCAGGGCAGGGGCGGCCACCGCGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012844-'30-38,'30-37,31-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.522 C2=0.000
Domain overlap (PFAM):
C1:
PF0764712=SAM_2=PD(32.8=67.9)
A:
PF139201=zf-C3HC4_3=PU(23.9=23.9)
C2:
PF139201=zf-C3HC4_3=PD(71.7=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCACGAGATCCTGC
R:
CGTGGGGAACAGGAGGGAG
Band lengths:
242-379
Functional annotations
There are 2 annotated functions for this event
PMID: 15256501
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, two hybrid. ELM ID: ELMI001342; ELM sequence: TPTAPQ; Overlap: FULL
PMID: 15256501
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, two hybrid. ELM ID: ELMI001343; ELM sequence: RPSAPP; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]