Special

DreEX6011796 @ danRer10

Exon Skipping

Gene
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-060526-97]
Coordinates
chr5:32265012-32267539:-
Coord C1 exon
chr5:32267470-32267539
Coord A exon
chr5:32267209-32267375
Coord C2 exon
chr5:32265012-32265333
Length
167 bp
Sequences
Splice sites
3' ss Seq
TGTCATCTTTTTCTCTTTAGCTT
3' ss Score
10.25
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
TTGGGGATCAACGAGGTTGGCGTGCAGAAAGCTCTTCTCCACTGGGCCAGAGATCGAACTCTGTCTGATC
Seq A exon
CTTTGCCGAAAACACTGAAAGAGATGGAGGAAGCTGGTCCATTCGCTCAGAGTGTTCCACTTCCACATCAGCTCACTCCTCCACTGACCCCCAGTGCACCTCTAACCCCCACGACCCCAAATCCTGACCGCTTCAACTCTGAGTGTGTTGTCTGCATGGAGCTTGAG
Seq C2 exon
TCTCAGGTGATCTTCCTGCCGTGTGGCCATGTATGCTGTTGTCAGACCTGTAGTGATGCCCTGCAGTCGTGCCCTCTGTGCCGTGGCTCTATATCTCAGCGTGTCCGTATTTACCATGGCTGAAGCCGGTGAGCGCCCACCAAATCCTCCAATGCTCACAATCATACCTCACGTGTCGGTGTTTTTCCTTGTCCCCATTCACTGCATGAAACGCATAGTCTGTGAACGTTCAAGCACTTTAGAAGTTAATGGATTTTCTCTTCCACTCCTGCTAGAATTAGCCAATCAGAGAAGCATCTATAACAGACGTTTGTCACATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060683-'25-27,'25-26,26-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (No Ref, Alt. Stop)

No structure available
Features
Disorder rate (Iupred):
  C1=0.042 A=0.536 C2=0.000
Domain overlap (PFAM):

C1:
PF0053625=SAM_1=PD(28.8=70.8)
A:
PF139201=zf-C3HC4_3=PU(22.2=17.9)
C2:
PF139201=zf-C3HC4_3=PD(73.3=80.5)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCTCTTCTCCACTGGGC
R:
GCGTTTCATGCAGTGAATGGG
Band lengths:
258-425
Functional annotations
There are 2 annotated functions for this event
PMID: 15256501
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, two hybrid. ELM ID: ELMI001342; ELM sequence: TPTAPQ; Overlap: FULL
PMID: 15256501
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, two hybrid. ELM ID: ELMI001343; ELM sequence: RPSAPP; Overlap: FULL


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]